DaXi imaging, nuclei segmentation and cell tracking of a D. rerio (zebrafish) embryo starting at roughly 12 hpf and ending at roughly 18 hpf. Transgenic line h2afva.mCherry. Illumination wavelength 561 nm, 2,200 × 800 × 300 µm × 2 views. Voxel sizes 0.440 × 0.440 × 1.806 µm. Acquisition lasted 6.6 h with 30-s acquisition interval for a total of 791 time points. Yang, B., Lange, M., Millett-Sikking, A. et al.
Aydin is a user-friendly, feature-rich, and fast image denoising tool that provides a number of self-supervised, auto-tuned, and unsupervised image denoising algorithms. Aydin handles from the get-go n-dimensional array-structured images with an arbitrary number of batch dimensions, channel dimensions, and typically up to 4 spatio-temporal dimensions.
Bin Yang1*, Merlin Lange, Alfred Millett-Sikking, Ahmet Can Solak, Shruthi Vijaykumar, Wanpeng Wang, Hirofumi Kobayashi, Matthew N Mccarroll, Lachlan W Whitehead, Reto P Fiolka, Thomas B. Kornberg, Andrew G York, Loic A. Royer*
Bin Yang, Alfred Millett-Sikking, Merlin Lange, Ahmet Can Solak, Hirofumi Kobayashi, Andrew York, Loic A. Royer